Uncultured prokaryotic genomes in the spotlight: An examination of publicly available data from metagenomics and single-cell genomics
Arikawa K. et al Computational and Structural Biotechnology Journal(2023) DOI:https://doi.org/10.1016/j.csbj.2023.09.010
Tools for microbial single-cell genomics for obtaining uncultured microbial genomes
Hosokawa M et. al Biophys Rev.(2023) DOI:https://doi.org/10.1007/s12551-023-01124-y
Target enrichment of uncultured human oral bacteria with phage-derived molecules found by single-cell genomics
Hosokawa M et. al Journal of Bioscience and Bioengineering.(2023) DOI：https://doi.org/10.1016/j.jbiosc.2023.04.005
Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing
Kogawa M et. al Front. Microbiol.(2023) DOI: https://doi.org/10.3389/fmicb.2023.1133917
Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral
Ide K et. al Microbiome. (2022) DOI: https://doi.org/10.1186/s40168-022-01395-9
Exploring strain diversity of dominant human skin bacterial species using single-cell genome sequencing
Ide K et. al Front. Microbiol.(2022), DOI https://doi.org/10.3389/fmicb.2022.955404
Massively parallel single-cell genomics of microbiomes in rice paddies
Aoki, W. et al Front. Microbiol. (2022), DOI: https://doi.org/10.3389/fmicb.2022.1024640
Strain-level profiling of viable microbial community by selective single-cell genome sequencing
Hosokawa M, Endo T et al. Scientific Report(2022) DOI https://doi.org/10.1038/s41598-022-08401-y
Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics
Arikawa K. et al Microbiome (2021) DOI: https://doi.org/10.1186/s40168-021-01152-4
High-Quality Draft Single-Cell Genome Sequences of Two Gammaproteobacteria Strains Sampled from Soil in a Strawberry Farm.
Yoda T et al. Genome Resource Announcement. (2020) DOI: 10.1128/MRA.00743-20