Development of Chimera AMP–Endolysin with Wider Spectra Against Gram-Negative Bacteria Using High-Throughput Assay
Kogawa M et al. Viruses (2025) DOI:https://doi.org/10.3390/v17020200
Single-cell genomics of single soil aggregates: methodological assessment and potential implications with a focus on nitrogen metabolism
Matsumura E et al. bioRxiv (2025) DOI:https://doi.org/10.1101/2025.01.09.632267
A single amplified genome catalog reveals the dynamics of mobilome and resistome in the human microbiome
Kawano-Sugaya T et al. Microbiome (2024) DOI:https://doi.org/10.1186/s40168-024-01903-z
Uncovering Endolysins against Methicillin-Resistant Staphylococcus aureus Using a Microbial Single-Cell Genome Database
Yoda T et. al ACS Infect. Dis(2024) DOI：https://doi.org/10.1021/acsinfecdis.4c00039
Hybrid sequence-based analysis reveals the distribution of bacterial species and genes in the oral microbiome at a high resolution
Yamaguchi M et. al Biochemistry and Biophysics Reports(2024) DOI：https://doi.org/10.1016/j.bbrep.2024.101717
Analysis of microbial dynamics in the soybean root-associated environments from community to single-cell levels
Kifushi M et. al Journal of Bioscience and Bioengineering (2024) DOI:https://doi.org/10.1016/j.jbiosc.2024.02.007
A combination of two-enzyme system and enzyme engineering improved the activity of a new PET hydrolase identified from soil bacterial genome
Mabashi-Asazuma H et. al bioRxiv (2024) DOI:https://doi.org/10.1101/2024.02.01.578500
Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere
Jitsuno K et al mSphere(2024) DOI:https://doi.org/10.1128/msphere.00337-23
Uncultured prokaryotic genomes in the spotlight: An examination of publicly available data from metagenomics and single-cell genomics
Arikawa K. et al Computational and Structural Biotechnology Journal(2023) DOI:https://doi.org/10.1016/j.csbj.2023.09.010
Tools for microbial single-cell genomics for obtaining uncultured microbial genomes
Hosokawa M et. al Biophys Rev.(2023) DOI:https://doi.org/10.1007/s12551-023-01124-y
Target enrichment of uncultured human oral bacteria with phage-derived molecules found by single-cell genomics
Hosokawa M et. al Journal of Bioscience and Bioengineering.(2023) DOI：https://doi.org/10.1016/j.jbiosc.2023.04.005
Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing
Kogawa M et. al Front. Microbiol.(2023) DOI: https://doi.org/10.3389/fmicb.2023.1133917
Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral
Ide K et. al Microbiome. (2022) DOI: https://doi.org/10.1186/s40168-022-01395-9
Exploring strain diversity of dominant human skin bacterial species using single-cell genome sequencing
Ide K et. al Front. Microbiol.(2022), DOI https://doi.org/10.3389/fmicb.2022.955404
Massively parallel single-cell genomics of microbiomes in rice paddies
Aoki, W. et al Front. Microbiol. (2022), DOI: https://doi.org/10.3389/fmicb.2022.1024640
Strain-level profiling of viable microbial community by selective single-cell genome sequencing
Hosokawa M, Endo T et al. Scientific Report(2022) DOI https://doi.org/10.1038/s41598-022-08401-y
Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawater
Nishikawa Y et al. ISME. (2022) DOI: https://doi.org/10.1038/s43705-022-00179-4
High-Quality Draft Single-Cell Genome Sequences of Two Gammaproteobacteria Strains Sampled from Soil in a Strawberry Farm.
Yoda T et al. Genome Resource Announcement. (2020) DOI: 10.1128/MRA.00743-20
Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota.
Chijiiwa R et al. Microbiome. (2020) DOI: 10.1186/s40168-019-0779-2
Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes
Kogawa M et al. Scientific Reports (2018) DOI: 10.1038/s41598-018-20384-3