[SAMPLE_ID].faa.gz Protein FASTA file of the translated CDS sequences. [SAMPLE_ID].ffn.gz Nucleotide FASTA file of all the prediction transcripts (CDS, rRNA, tRNA, tmRNA, misc_RNA) [SAMPLE_ID].fna.gz Nucleotide FASTA file of the input contig sequences. [SAMPLE_ID].tsv Tab-separated file of all features: locus_tag,ftype,len_bp,gene,EC_number,COG,product